Select Publications from ExFAB Researchers:

The GoldX Fiducial Eraser

Authors: Peter Van Blerkom, Armel Bezault, C\ Sauvanet, Dorit Hanein, Niels Volkmann
Year: 2024
Type: Journal Article

CryoEM Workflow Acceleration with Feret Signatures

Authors: Pierre Nottelet, Peter Van Blerkom, Xiao-Ping Xu, Dorit Hanein, Niels Volkmann
Year: 2024
Type: Journal Article

Building momentum through networks: Bioimaging across the Americas

Authors: Mariana De Niz, Rodrigo ia, Celina Ramirez, Ysa Pakowski, Yuriney Abonza, Nikki Bialy, Vanessa Orr, Andres Olivera, Victor Abonza, Karina Alleva, others
Year: 2024
Type: Journal Article

High-resolution yeast actin structures indicate the molecular mechanism of actin filament stiffening by cations

Authors: Xiao-Ping Xu, Wenxiang Cao, Mark Swift, Nandan Pandit, Andrew Huehn, Charles Sindelar V, Enrique De La Cruz, Dorit Hanein, Niels Volkmann
Year: 2024
Type: Journal Article

Electron bifurcation and fluoride efflux systems implicated in defluorination of perfluorinated unsaturated carboxylic acids by Acetobacterium spp

Authors: Yaochun Yu, Fengjun Xu, Weiyang Zhao, Calvin Thoma, Shun Che, Jack Richman, Bosen Jin, Yiwen Zhu, Yue Xing, Lawrence Wackett, others
Year: 2024
Type: Journal Article

Pontiella agarivorans sp. nov., a novel marine anaerobic bacterium capable of degrading macroalgal polysaccharides and fixing nitrogen

Authors: Na Liu, Veronika Kivenson, Xuefeng Peng, Zhisong Cui, Thomas Lankiewicz, Kelsey Gosselin, Chance English, Elaina Blair, Michelle Malley, David Valentine
Year: 2024
Type: Journal Article

Targeted hypermutation of putative antigen sensors in multicellular bacteria

Authors: Hugo e, Amy Eisenberg, Emily Junkins, Gabriel Leventhal, Anakha Ganesh, Otto Cordero, Blair Paul, David Valentine, Michelle O’Malley, Elizabeth Wilbanks
Year: 2024
Type: Journal Article

A fluorometric assay for high-throughput phosphite quantitation in biological and environmental matrices

Authors: Clara Bailey, Brandon Greene
Year: 2023
Type: Journal Article

Regulation of defective mitochondrial DNA accumulation and transmission in C. elegans by the programmed cell death and aging pathways

Authors: Sagen Flowers, Rushali Kothari, Yamila Cleuren, Melissa Alcorn, Chee Ewe, Geneva Alok, Samantha Fiallo, Pradeep Joshi, Joel Rothman
Year: 2023
Type: Journal Article

Viruses of the Turriviridae: an emerging model system for studying archaeal virus-host interactions

Authors: Michael Overton, Robert Manuel, Martin Lawrence, Jamie Snyder
Year: 2023
Type: Journal Article

Lignin deconstruction by anaerobic fungi

Authors: Thomas Lankiewicz, Hemant Choudhary, Yu Gao, Bashar Amer, Stephen Lillington, Patrick Leggieri, Jennifer Brown, Candice Swift, Anna Lipzen, Hyunsoo Na, others
Year: 2023
Type: Journal Article

Genomic mysteries of giant bacteria: insights and implications

Authors: Danny Ionescu, Jean-Marie Volland, Paul-Emile Contarini, Olivier Gros
Year: 2023
Type: Journal Article

Substantial defluorination of polychlorofluorocarboxylic acids triggered by anaerobic microbial hydrolytic dechlorination

Authors: Bosen Jin, Huaqing Liu, Shun Che, Jinyu Gao, Yaochun Yu, Jinyong Liu, Yujie Men
Year: 2023
Type: Journal Article

The Mechanism of Inhibition of Pyruvate Formate Lyase by Methacrylate

Authors: Juan Cáceres, August Dolmatch, Brandon Greene
Year: 2023
DOI: 10.1021/jacs.3c07256
Type: Journal Article

The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force

Authors: David Sannino, Francine Arroyo, Charles Pepe-Ranney, Wenbo Chen, Jean-Marie Volland, Nathalie Elisabeth, Esther Angert
Year: 2023
Type: Journal Article

Aerobic biotransformation and defluorination of fluoroalkylether substances (ether PFAS): substrate specificity, pathways, and applications

Authors: Bosen Jin, Yiwen Zhu, Weiyang Zhao, Zekun Liu, Shun Che, Kunpeng Chen, Ying-Hsuan Lin, Jinyong Liu, Yujie Men
Year: 2023
Type: Journal Article

A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles

Authors: Jean-Marie Volland, Silvina Gonzalez-Rizzo, Olivier Gros, Tom\ Tyml, Natalia Ivanova, Frederik Schulz, Danielle Goudeau, Nathalie Elisabeth, Nandita Nath, Daniel Udwary, others
Year: 2022
Type: Journal Article

Feedforward regulatory logic controls the specification-to-differentiation transition and terminal cell fate during Caenorhabditis elegans endoderm development

Authors: Chee Ewe, Erica Sommermann, Josh Kenchel, Sagen Flowers, Morris Maduro, Pradeep Joshi, Joel Rothman
Year: 2022
Type: Journal Article

Microbial defluorination of unsaturated per-and polyfluorinated carboxylic acids under anaerobic and aerobic conditions: a structure specificity study

Authors: Yaochun Yu, Shun Che, Changxu Ren, Bosen Jin, Zhenyu Tian, Jinyong Liu, Yujie Men
Year: 2022
Type: Journal Article

Co-cultivation of anaerobic fungi with Clostridium acetobutylicum bolsters butyrate and butanol production from cellulose and lignocellulose

Authors: Jennifer Brown, Matthew Perisin, Candice Swift, Marcus Benyamin, Sanchao Liu, Vasanth Singan, Yu Zhang, Emily Savage, Christa Pennacchio, Igor Grigoriev V, others
Year: 2022
Type: Journal Article

Biofilm disruption enhances growth rate and carbohydrate-active enzyme production in anaerobic fungi

Authors: Patrick Leggieri, Megan Valentine, Michelle Malley
Year: 2022
Type: Journal Article

Cellulosome localization patterns vary across life stages of anaerobic fungi

Authors: Stephen Lillington, William Chrisler, Charles Haitjema, Sean Gilmore, Chuck Smallwood, Vaithiyalingam Shutthanandan, James Evans, Michelle O’Malley
Year: 2021
Type: Journal Article

Stressful development: integrating endoderm development, stress, and longevity

Authors: Chee Ewe, Geneva Alok, Joel Rothman
Year: 2021
Type: Journal Article

Cocultivation of anaerobic fungi with rumen bacteria establishes an antagonistic relationship

Authors: Candice Swift, Katherine Louie, Benjamin Bowen, Casey Hooker, Kevin Solomon V, Vasanth Singan, Chris Daum, Christa Pennacchio, Kerrie Barry, Vaithiyalingam Shutthanandan, others
Year: 2021
Type: Journal Article

Structure-specific aerobic defluorination of short-chain fluorinated carboxylic acids by activated sludge communities

Authors: Shun Che, Bosen Jin, Zekun Liu, Yaochun Yu, Jinyong Liu, Yujie Men
Year: 2021
Type: Journal Article

Microbial cleavage of C-F bonds in two C6 per-and polyfluorinated compounds via reductive defluorination

Authors: Yaochun Yu, Kunyang Zhang, Zhong Li, Changxu Ren, Jin Chen, Ying-Hsuan Lin, Jinyong Liu, Yujie Men
Year: 2020
Type: Journal Article

Structure-based mutagenesis of Sulfolobus turreted icosahedral virus B204 reveals essential residues in the Virion-associated DNA-packaging ATPase

Authors: Nikki Dellas, Jamie Snyder, Michael Dills, Sheena Nicolay, Keshia Kerchner, Susan Brumfield, Martin Lawrence, Mark Young
Year: 2016
Type: Journal Article

Archaeal viruses: diversity, replication, and structure

Authors: Nikki Dellas, Jamie Snyder, Benjamin Bolduc, Mark Young
Year: 2014
Type: Journal Article

Functional interplay between a virus and the ESCRT machinery in archaea

Authors: Jamie Snyder, Rachel Samson, Susan Brumfield, Stephen Bell, Mark Young
Year: 2013
Type: Journal Article

Sulfolobus turreted icosahedral virus c92 protein responsible for the formation of pyramid-like cellular lysis structures

Authors: Jamie Snyder, Susan Brumfield, Nan Peng, Qunxin She, Mark Young
Year: 2011
Type: Journal Article